PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g16870
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 250aa    MW: 26420.5 Da    PI: 8.379
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g16870genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.0001480102123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ykC+ C+k Fs+   L  H  +H
  CA08g16870  80 YKCSVCDKAFSSYQALGGHKASH 102
                 9***********99999998887 PP

2zf-C2H214.10.00014140162123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++C+k F++   L  H r+H
  CA08g16870 140 HVCSICHKAFPTGQALGGHKRRH 162
                 79*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.71E-979102No hitNo description
PfamPF139122.3E-1379104IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-480102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.26380102IPR007087Zinc finger, C2H2
SMARTSM003550.007380102IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SuperFamilySSF576672.71E-9135162No hitNo description
PROSITE profilePS501579.619140167IPR007087Zinc finger, C2H2
PfamPF139127.8E-12140164IPR007087Zinc finger, C2H2
SMARTSM003550.065140162IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280142162IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDSWAKGKRS KRPRVENPPT EEEYLALCLI MLARSGTGKE TGTGNVTEPG SSGVSVHEEP  60
EKKTAELPLV RYTEKTEQAY KCSVCDKAFS SYQALGGHKA SHRKLPTAAT TGVASDDNNP  120
GGAGGGGGNI SVLNPSGRSH VCSICHKAFP TGQALGGHKR RHYEGKLGGN NRDNGIGGGG  180
GVHSGSVVTT SDGGASTHTP RDFDLNMPPS PELQLDLRID CGMKSQRMIE QEVESPMPTK  240
KPRLFFSMD*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016539435.11e-163PREDICTED: zinc finger protein ZAT6-like
TrEMBLQ408971e-115Q40897_PETHY; Zinc-finger DNA binding protein
STRINGPGSC0003DMT4000847511e-103(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.13e-41salt tolerance zinc finger